Effect of Nitrogen Atom Substitution in A3 Adenosine Receptor Binding: N-(4,6-Diarylpyridin-2-yl)acetamides as Potent and Selective Antagonists

J Med Chem. 2017 Sep 14;60(17):7502-7511. doi: 10.1021/acs.jmedchem.7b00860. Epub 2017 Aug 21.

Abstract

We report the first family of 2-acetamidopyridines as potent and selective A3 adenosine receptor (AR) antagonists. The computer-assisted design was focused on the bioisosteric replacement of the N1 atom by a CH group in a previous series of diarylpyrimidines. Some of the generated 2-acetamidopyridines elicit an antagonistic effect with excellent affinity (Ki < 10 nM) and outstanding selectivity profiles, providing an alternative and simpler chemical scaffold to the parent series of diarylpyrimidines. In addition, using molecular dynamics and free energy perturbation simulations, we elucidate the effect of the second nitrogen of the parent diarylpyrimidines, which is revealed as a stabilizer of a water network in the binding site. The discovery of 2,6-diaryl-2-acetamidopyridines represents a step forward in the search of chemically simple, potent, and selective antagonists for the hA3AR, and exemplifies the benefits of a joint theoretical-experimental approach to identify novel hA3AR antagonists through succinct and efficient synthetic methodologies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetamides / chemistry*
  • Acetamides / pharmacology*
  • Adenosine A3 Receptor Antagonists / chemistry*
  • Adenosine A3 Receptor Antagonists / pharmacology*
  • Animals
  • Binding Sites
  • CHO Cells
  • Computer-Aided Design
  • Cricetulus
  • Drug Design
  • Humans
  • Molecular Docking Simulation
  • Nitrogen / chemistry
  • Nitrogen / pharmacology
  • Pyrimidines / chemistry
  • Pyrimidines / pharmacology
  • Receptor, Adenosine A3 / chemistry
  • Receptor, Adenosine A3 / metabolism*
  • Structure-Activity Relationship

Substances

  • Acetamides
  • Adenosine A3 Receptor Antagonists
  • Pyrimidines
  • Receptor, Adenosine A3
  • Nitrogen